article Open AccessTop 1% cited
Comprehensive Integration of Single-Cell Data
Cell · 2019 · Vol. 177(7) · pp. 1888–1902.e21
Tim Stuart✉(New York Genome Center)Andrew Butler(New York University)Paul Hoffman(New York Genome Center)Christoph Hafemeister(New York Genome Center)Efthymia Papalexi(New York Genome Center)William M. Mauck(New York University)Yuhan Hao(New York University)Marlon Stoeckius(New York Genome Center)Peter Smibert(New York Genome Center)Rahul Satija(New York University)
Single-cell and spatial transcriptomicsCell Image Analysis TechniquesAdvanced Fluorescence Microscopy TechniquesBiologyComputational biologyData integrationComputer scienceData mining
MeSH terms
HumansSoftwareSequence Analysis, RNAGene Expression ProfilingDatabases, Nucleic AcidSingle-Cell AnalysisTranscriptome
Funding
- National Institutes of Health
Citations
16,351
FWCI
648.36
field-weighted impact
References
102
Percentile
100%
vs. same field & year
Citations per year
Cited by
Single-cell RNA sequencing reveals profibrotic roles of distinct epithelial and mesenchymal lineages in pulmonary fibrosis
Science Advances · 2020 · 1,054 citations
Complex Oscillatory Waves Emerging from Cortical Organoids Model Early Human Brain Network Development
Cell stem cell · 2019 · 925 citations
A benchmark of batch-effect correction methods for single-cell RNA sequencing data
Genome biology · 2020 · 1,177 citations
Single cell RNA sequencing of 13 human tissues identify cell types and receptors of human coronaviruses
Biochemical and Biophysical Research Communications · 2020 · 908 citations
Dictionary learning for integrative, multimodal and scalable single-cell analysis
Nature Biotechnology · 2023 · 4,189 citations
Eleven grand challenges in single-cell data science
Genome biology · 2020 · 1,379 citations
Normalization and variance stabilization of single-cell RNA-seq data using regularized negative binomial regression
Genome biology · 2019 · 4,783 citations
Single-cell chromatin state analysis with Signac
Nature Methods · 2021 · 1,734 citations
References
Statistical significance for genomewide studies
Proceedings of the National Academy of Sciences · 2003 · 10,009 citations
WGCNA: an R package for weighted correlation network analysis
BMC Bioinformatics · 2008 · 28,332 citations
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Molecular Cell · 2010 · 14,269 citations
Spatial reconstruction of single-cell gene expression data
Nature Biotechnology · 2015 · 7,447 citations
TopHat: discovering splice junctions with RNA-Seq
Bioinformatics · 2009 · 12,093 citations
BEDTools: a flexible suite of utilities for comparing genomic features
Bioinformatics · 2010 · 29,774 citations
The Sequence Alignment/Map format and SAMtools
Bioinformatics · 2009 · 66,208 citations
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Genome biology · 2009 · 22,766 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.