article Open AccessTop 1% cited
The Sequence Alignment/Map format and SAMtools
Bioinformatics · 2009 · Vol. 25(16) · pp. 2078–2079
Heng Li✉(University of California, Los Angeles)Robert E. Handsaker(University of California, Los Angeles)Alec Wysoker(Broad Institute)Tim Fennell(Broad Institute)Jue Ruan(University of California, Los Angeles)Nils Homer(Wellcome Sanger Institute)Gábor Marth(University of California, Los Angeles)Gonçalo R. Abecasis(Beijing Institute of Genomics)Richard Durbin(University of California, Los Angeles)1000 Genome Project Data Processing Subgroup
Abstract
http://samtools.sourceforge.net.
Genomics and Phylogenetic StudiesBacteriophages and microbial interactionsChromosomal and Genetic VariationsComputer scienceSearch engine indexingSequence alignmentk-merMultiple sequence alignmentFile formatSanger sequencingSequence (biology)Alignment-free sequence analysisInformation retrieval
MeSH terms
AlgorithmsBase SequenceMolecular Sequence DataSoftwareSequence AlignmentGenomeSequence Analysis, DNAComputational BiologyGenomics
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References
Mapping short DNA sequencing reads and calling variants using mapping quality scores
Genome Research · 2008 · 2,707 citations
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Genome biology · 2009 · 22,766 citations
The Human Genome Browser at UCSC
Genome Research · 2002 · 10,897 citations
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