articleTop 1% cited
Near-optimal probabilistic RNA-seq quantification
Nature Biotechnology · 2016 · Vol. 34(5) · pp. 525–527
Nicolas Bray(Innovative Genomics Institute)Harold Pimentel(University of California, Berkeley)Páll Melsted(University of Iceland)Lior Pachter✉(University of California, Berkeley)
Genomics and Phylogenetic StudiesMolecular Biology Techniques and ApplicationsRNA and protein synthesis mechanismsLaptopRNA-SeqComputer scienceBottleneckProbabilistic logicRNAComputational biologyAlgorithmArtificial intelligenceBiology
MeSH terms
AlgorithmsComputer SimulationData Interpretation, StatisticalPattern Recognition, AutomatedRNASensitivity and SpecificitySoftwareReproducibility of ResultsModels, StatisticalSequence AlignmentSequence Analysis, RNAHigh-Throughput Nucleotide Sequencing
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References
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
BMC Bioinformatics · 2011 · 22,985 citations
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
Genome Research · 2008 · 2,821 citations
HTSeq—a Python framework to work with high-throughput sequencing data
Bioinformatics · 2014 · 22,334 citations
Improving RNA-Seq expression estimates by correcting for fragment bias
Genome biology · 2011 · 1,812 citations
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Genome biology · 2013 · 13,586 citations
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Nature Biotechnology · 2010 · 16,341 citations
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