article Open AccessTop 1% cited
Differential analysis of RNA-seq incorporating quantification uncertainty
Nature Methods · 2017 · Vol. 14(7) · pp. 687–690
Harold Pimentel(University of California, Berkeley)Nicolas Bray(University of California, Berkeley)Suzette Puente(University of California, Berkeley)Páll Melsted(University of Iceland)Lior Pachter✉(California Institute of Technology)
Single-cell and spatial transcriptomicsGene expression and cancer classificationGene Regulatory Network AnalysisBootstrapping (finance)Computer scienceVariance (accounting)SoftwareRNA-SeqDifferential (mechanical device)Data miningComputational biologyGene expressionBiology
MeSH terms
Base SequenceComputer SimulationModels, BiologicalRNASoftwareGene Expression
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Genome biology · 2014 · 6,605 citations
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Bioinformatics · 2013 · 28,111 citations
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Nature Biotechnology · 2010 · 16,341 citations
Differential expression analysis for sequence count data
Genome biology · 2010 · 16,273 citations
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Nature Biotechnology · 2012 · 3,712 citations
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
Genome biology · 2014 · 97,164 citations
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