articleTop 1% cited
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Nature Biotechnology · 2010 · Vol. 28(5) · pp. 511–515
Cole Trapnell✉(University of Maryland, College Park)Brian A. Williams(California Institute of Technology)Geo Pertea(University of Maryland, College Park)A Mortazavi(California Institute of Technology)Gordon Kwan(California Institute of Technology)Marijke J. van Baren(Washington University in St. Louis)Steven L. Salzberg(University of Maryland, College Park)B Wold(California Institute of Technology)Lior Pachter(University of California, Berkeley)
RNA Research and SplicingRNA modifications and cancerCancer-related molecular mechanisms researchBiologyRNA-SeqGeneRNA splicingTranscriptomeComputational biologyAlternative splicingGeneticsGenomeDe novo transcriptome assembly
MeSH terms
AlgorithmsAnimalsCell DifferentiationCell LineRNA, MessengerSoftwareProto-Oncogene Proteins c-mycGenomeSequence Analysis, RNAProtein IsoformsOligonucleotide Array Sequence AnalysisGene Expression ProfilingMice
Citations
16,341
FWCI
193.39
field-weighted impact
References
31
Percentile
100%
vs. same field & year
Citations per year
Cited by
Distinct populations of inflammatory fibroblasts and myofibroblasts in pancreatic cancer
The Journal of Experimental Medicine · 2017 · 2,400 citations
Integrated Genomic Characterization of Pancreatic Ductal Adenocarcinoma
Cancer Cell · 2017 · 2,015 citations
Metabolic reprogramming during neuronal differentiation from aerobic glycolysis to neuronal oxidative phosphorylation
eLife · 2016 · 656 citations
Dynamic regulation of genome-wide pre-mRNA splicing and stress tolerance by the Sm-like protein LSm5 in Arabidopsis
Genome biology · 2014 · 2,287 citations
Many lncRNAs, 5’UTRs, and pseudogenes are translated and some are likely to express functional proteins
eLife · 2015 · 596 citations
Long non-coding RNAs as a source of new peptides
eLife · 2014 · 556 citations
Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation
Nucleic Acids Research · 2012 · 5,771 citations
Pharmacological inhibition of cystine–glutamate exchange induces endoplasmic reticulum stress and ferroptosis
eLife · 2014 · 2,015 citations
References
TopHat: discovering splice junctions with RNA-Seq
Bioinformatics · 2009 · 12,093 citations
The Sequence Alignment/Map format and SAMtools
Bioinformatics · 2009 · 66,208 citations
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
Genome Research · 2008 · 2,821 citations
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Genome biology · 2009 · 22,766 citations
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Nature Methods · 2008 · 14,174 citations
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
BMC Bioinformatics · 2010 · 1,770 citations
A Decomposition Theorem for Partially Ordered Sets
Annals of Mathematics · 1950 · 979 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.