article Open AccessTop 1% cited
Minimap2: pairwise alignment for nucleotide sequences
Bioinformatics · 2018 · Vol. 34(18) · pp. 3094–3100
Heng Li✉(Broad Institute)
Abstract
Supplementary data are available at Bioinformatics online.
Genomics and Phylogenetic StudiesRNA and protein synthesis mechanismsChromosomal and Genetic VariationsPairwise comparisonNucleotideMultiple sequence alignmentSequence alignmentComputational biologyComputer scienceGeneticsBiologyArtificial intelligenceGene
MeSH terms
AlgorithmsBase SequenceSoftwareSequence Analysis, DNAGenomicsHigh-Throughput Nucleotide Sequencing
Funding
- National Human Genome Research Institute
Citations
16,068
FWCI
367.04
field-weighted impact
References
45
Percentile
100%
vs. same field & year
Citations per year
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References
Integrative genomics viewer
Nature Biotechnology · 2011 · 16,203 citations
An improved algorithm for matching biological sequences
Journal of Molecular Biology · 1982 · 1,751 citations
Fast and accurate short read alignment with Burrows–Wheeler transform
Bioinformatics · 2009 · 61,752 citations
The Sequence Alignment/Map format and SAMtools
Bioinformatics · 2009 · 66,208 citations
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory
BMC Bioinformatics · 2012 · 1,346 citations
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Nucleic Acids Research · 1997 · 74,154 citations
A framework for variation discovery and genotyping using next-generation DNA sequencing data
Nature Genetics · 2011 · 12,243 citations
STAR: ultrafast universal RNA-seq aligner
Bioinformatics · 2012 · 54,639 citations
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