articleTop 1% cited
DADA2: High-resolution sample inference from Illumina amplicon data
Nature Methods · 2016 · Vol. 13(7) · pp. 581–583
Benjamin J. Callahan✉(Stanford University)Paul J. McMurdie(Second Genome (United States))Michael Rosen(Stanford University)Andrew Han(Second Genome (United States))Amy Jo A Johnson(Second Genome (United States))Susan Holmes(Stanford University)
Gut microbiota and healthProbiotics and Fermented FoodsReproductive tract infections researchAmpliconComputational biologyBiologySample (material)Computer scienceGeneticsPolymerase chain reactionGene
MeSH terms
AnimalsDNA, BacterialFalse Positive ReactionsFecesFemaleHumansLactobacillusPregnancyRNA, Ribosomal, 16SSoftwareVaginaReproducibility of ResultsCohort StudiesSequence Analysis, DNAComputational Biology
Citations
34,738
FWCI
302.52
field-weighted impact
References
23
Percentile
100%
vs. same field & year
Citations per year
Cited by
Disease Suppressive Soils: New Insights from the Soil Microbiome
Phytopathology · 2017 · 587 citations
Exact sequence variants should replace operational taxonomic units in marker-gene data analysis
The ISME Journal · 2017 · 3,352 citations
Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data
Nature Protocols · 2020 · 1,775 citations
Best practices for analysing microbiomes
Nature Reviews Microbiology · 2018 · 1,823 citations
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
eLife · 2021 · 2,128 citations
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Nature Biotechnology · 2019 · 22,942 citations
Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis
Nature Communications · 2019 · 2,167 citations
The Firmicutes/Bacteroidetes Ratio: A Relevant Marker of Gut Dysbiosis in Obese Patients?
Nutrients · 2020 · 2,165 citations
References
QIIME allows analysis of high-throughput community sequencing data
Nature Methods · 2010 · 35,655 citations
Minimum entropy decomposition: Unsupervised oligotyping for sensitive partitioning of high-throughput marker gene sequences
The ISME Journal · 2014 · 631 citations
UPARSE: highly accurate OTU sequences from microbial amplicon reads
Nature Methods · 2013 · 16,991 citations
Removing Noise From Pyrosequenced Amplicons
BMC Bioinformatics · 2011 · 1,593 citations
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Applied and Environmental Microbiology · 2009 · 21,514 citations
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
Applied and Environmental Microbiology · 2013 · 7,445 citations
Structure, function and diversity of the healthy human microbiome
Nature · 2012 · 11,749 citations
UCHIME improves sensitivity and speed of chimera detection
Bioinformatics · 2011 · 15,364 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.