article Open AccessTop 1% cited
UCHIME improves sensitivity and speed of chimera detection
Bioinformatics · 2011 · Vol. 27(16) · pp. 2194–2200
R. C. Edgar✉(Broad Institute)Brian J. Haas(University of Glasgow)José C. Clemente(University of Colorado Boulder)Christopher Quince(University of Glasgow)Rob Knight(University of Glasgow)
Abstract
Supplementary data are available at Bioinformatics online.
Genomics and Phylogenetic StudiesMicrobial Community Ecology and PhysiologyEnvironmental DNA in Biodiversity StudiesChimera (genetics)Computational biologyBiologySpurious relationshipPolymerase chain reactionGeneticsComputer scienceGeneMachine learning
MeSH terms
AlgorithmsSoftwarePolymerase Chain ReactionArtifactsSequence Analysis, DNAComputational Biology
Funding
- Howard Hughes Medical Institute
- National Institutes of Health
- Engineering and Physical Sciences Research Council
Citations
15,364
FWCI
126.29
field-weighted impact
References
21
Percentile
100%
vs. same field & year
Citations per year
Cited by
Distinct soil microbial diversity under long-term organic and conventional farming
The ISME Journal · 2014 · 1,403 citations
Microbiome Networks: A Systems Framework for Identifying Candidate Microbial Assemblages for Disease Management
Phytopathology · 2016 · 364 citations
Microbiota transplantation restores normal fecal bile acid composition in recurrent<i>Clostridium difficile</i>infection
American Journal of Physiology-Gastrointestinal and Liver Physiology · 2013 · 423 citations
Balance between community assembly processes mediates species coexistence in agricultural soil microbiomes across eastern China
The ISME Journal · 2019 · 997 citations
Environmental <scp>DNA</scp> metabarcoding: Transforming how we survey animal and plant communities
Molecular Ecology · 2017 · 1,861 citations
Urine Is Not Sterile: Use of Enhanced Urine Culture Techniques To Detect Resident Bacterial Flora in the Adult Female Bladder
Journal of Clinical Microbiology · 2013 · 857 citations
Microplastic is an Abundant and Distinct Microbial Habitat in an Urban River
Environmental Science & Technology · 2014 · 1,436 citations
Temporal Dynamics of the Human Vaginal Microbiota
Science Translational Medicine · 2012 · 1,595 citations
References
Areas beneath the relative operating characteristics (ROC) and relative operating levels (ROL) curves: Statistical significance and interpretation
Quarterly Journal of the Royal Meteorological Society · 2002 · 885 citations
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
Genome Research · 2011 · 3,523 citations
Removing Noise From Pyrosequenced Amplicons
BMC Bioinformatics · 2011 · 1,593 citations
Search and clustering orders of magnitude faster than BLAST
Bioinformatics · 2010 · 21,473 citations
Taxonomic Note: A Place for DNA-DNA Reassociation and 16S rRNA Sequence Analysis in the Present Species Definition in Bacteriology
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 1994 · 6,996 citations
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Nucleic Acids Research · 1997 · 74,154 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.
