articleTop 1% cited
UPARSE: highly accurate OTU sequences from microbial amplicon reads
Nature Methods · 2013 · Vol. 10(10) · pp. 996–998
R. C. Edgar✉(Tiburon Associates (United States))
Microbial Community Ecology and PhysiologyGut microbiota and healthGenomics and Phylogenetic StudiesOperational taxonomic unitAmpliconBiologyComputational biologyAmplicon sequencingPipeline (software)GeneticsGeneComputer sciencePolymerase chain reaction
MeSH terms
AlgorithmsHumansPhylogenyResearch DesignRNA, Ribosomal, 16SSensitivity and SpecificitySoftwareDatabases, GeneticMetagenomicsMicrobiota
Citations
16,991
FWCI
320.26
field-weighted impact
References
20
Percentile
100%
vs. same field & year
Citations per year
Cited by
The severity of nonalcoholic fatty liver disease is associated with gut dysbiosis and shift in the metabolic function of the gut microbiota
Hepatology · 2015 · 1,424 citations
Distinct patterns and processes of abundant and rare eukaryotic plankton communities following a reservoir cyanobacterial bloom
The ISME Journal · 2018 · 644 citations
Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots
The ISME Journal · 2019 · 1,258 citations
Embracing the unknown: disentangling the complexities of the soil microbiome
Nature Reviews Microbiology · 2017 · 3,256 citations
Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data
Nature Protocols · 2020 · 1,775 citations
Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics
Frontiers in Microbiology · 2016 · 917 citations
Linking Plant Secondary Metabolites and Plant Microbiomes: A Review
Frontiers in Plant Science · 2021 · 646 citations
Kombucha tea fermentation: Microbial and biochemical dynamics
International Journal of Food Microbiology · 2016 · 481 citations
References
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
Applied and Environmental Microbiology · 2006 · 11,173 citations
QIIME allows analysis of high-throughput community sequencing data
Nature Methods · 2010 · 35,655 citations
Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing
Nature Methods · 2012 · 4,344 citations
Database resources of the National Center for Biotechnology Information: update
Nucleic Acids Research · 2003 · 11,003 citations
Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons
Genome Research · 2011 · 3,523 citations
Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies
PLoS ONE · 2011 · 2,122 citations
Removing Noise From Pyrosequenced Amplicons
BMC Bioinformatics · 2011 · 1,593 citations
Search and clustering orders of magnitude faster than BLAST
Bioinformatics · 2010 · 21,473 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.
