article Open AccessTop 1% cited
HISAT: a fast spliced aligner with low memory requirements
Nature Methods · 2015 · Vol. 12(4) · pp. 357–360
Daehwan Kim✉(Johns Hopkins University)Ben Langmead(Johns Hopkins University)Steven L. Salzberg(Johns Hopkins University)
Genomics and Phylogenetic StudiesRNA and protein synthesis mechanismsRNA modifications and cancerSearch engine indexingComputer scienceGenomeIndex (typography)Computational biologyReference genomeAlignment-free sequence analysisSequence alignmentData miningBiology
MeSH terms
HumansPseudogenesSequence AlignmentSequence Analysis, DNASequence Analysis, RNALimit of Detection
Citations
25,449
FWCI
221.45
field-weighted impact
References
16
Percentile
100%
vs. same field & year
Citations per year
Cited by
Lactate and pyruvate promote oxidative stress resistance through hormetic ROS signaling
Cell Death and Disease · 2019 · 342 citations
RNA sequencing: the teenage years
Nature Reviews Genetics · 2019 · 1,988 citations
Differential analysis of RNA-seq incorporating quantification uncertainty
Nature Methods · 2017 · 1,686 citations
Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown
Nature Protocols · 2016 · 7,457 citations
Transcriptome assembly from long-read RNA-seq alignments with StringTie2
Genome biology · 2019 · 2,037 citations
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
Nature Biotechnology · 2019 · 14,977 citations
A Unique Microglia Type Associated with Restricting Development of Alzheimer’s Disease
Cell · 2017 · 5,406 citations
Recognition of RNA N6-methyladenosine by IGF2BP proteins enhances mRNA stability and translation
Nature Cell Biology · 2018 · 3,042 citations
References
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Nature Protocols · 2012 · 12,813 citations
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Genome biology · 2013 · 13,586 citations
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Nature Methods · 2008 · 14,174 citations
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
Genes & Development · 2011 · 3,656 citations
STAR: ultrafast universal RNA-seq aligner
Bioinformatics · 2012 · 54,639 citations
Fast gapped-read alignment with Bowtie 2
Nature Methods · 2012 · 59,710 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.