article Open AccessTop 1% cited
Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
Nature Biotechnology · 2019 · Vol. 37(8) · pp. 907–915
Daehwan Kim✉(Southwestern Medical Center)Joseph M. Paggi(Stanford University)Chanhee Park(The University of Texas Southwestern Medical Center)Christopher Bennett(The University of Texas Southwestern Medical Center)Steven L. Salzberg(Johns Hopkins University)
Genomics and Phylogenetic StudiesChromosomal and Genetic VariationsRNA and protein synthesis mechanismsGenomeGenotypingComputational biologyReference genomeHaplotypeSearch engine indexingPopulationBiologyComputer scienceGenomics
MeSH terms
Base SequenceGenotypeHumansSoftwareGenetic VariationReproducibility of ResultsGenome, HumanSequence Analysis, DNASequence Analysis, RNABenchmarkingGenomics
Funding
- Cancer Research Institute
- Cancer Prevention and Research Institute of Texas
- National Human Genome Research Institute
Citations
14,977
FWCI
391.21
field-weighted impact
References
44
Percentile
100%
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References
SOAP2: an improved ultrafast tool for short read alignment
Bioinformatics · 2009 · 3,892 citations
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Nature Methods · 2015 · 25,449 citations
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Bioinformatics · 2009 · 61,752 citations
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Genome Research · 2008 · 2,707 citations
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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Genome biology · 2009 · 22,766 citations
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Genome Research · 2010 · 1,143 citations
<tt>BLAT</tt>—The <tt>BLAST</tt>-Like Alignment Tool
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