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Quantification of the pace of biological aging in humans through a blood test, the DunedinPoAm DNA methylation algorithm

eLife · 2020 · Vol. 9
Daniel W. BelskyAvshalom CaspiLouise ArseneaultAndrea BaccarelliDavid L. CorcoranXu GaoEilís HannonHona Lee HarringtonLine Jee Hartmann RasmussenRenate HoutsKim M. HuffmanWilliam E. KrausDayoon KwonJonathan MillCarl F. PieperJoseph A. PrinzRichie PoultonJoel SchwartzKaren SugdenPantel VokonasBenjamin WilliamsTerrie E. Moffitt

Abstract

Biological aging is the gradual, progressive decline in system integrity that occurs with advancing chronological age, causing morbidity and disability. Measurements of the pace of aging are needed as surrogate endpoints in trials of therapies designed to prevent disease by slowing biological aging. We report a blood-DNA-methylation measure that is sensitive to variation in pace of biological aging among individuals born the same year. We first modeled change-over-time in 18 biomarkers tracking organ-system integrity across 12 years of follow-up in n = 954 members of the Dunedin Study born in 1972-1973. Rates of change in each biomarker over ages 26-38 years were composited to form a measure of aging-related decline, termed Pace-of-Aging. Elastic-net regression was used to develop a DNA-methylation predictor of Pace-of-Aging, called DunedinPoAm for Dunedin(P)ace(o)f(A)ging(m)ethylation. Validation analysis in cohort studies and the CALERIE trial provide proof-of-principle for DunedinPoAm as a single-time-point measure of a person's pace of biological aging.

Epigenetics and DNA MethylationPaceBiomarkerBiological ageDNA methylationHealthy agingCohortBiologyMedicineBioinformaticsGerontology

MeSH terms

AdultAgedAged, 80 and overAgingAlgorithmsChronic DiseaseCognitionFemaleHumansMaleMiddle AgedRisk FactorsDNA MethylationCognitive Dysfunction

Funding

  • Canadian Institute for Advanced Research
  • Jacobs Foundation
  • Medical Research Council
  • Economic and Social Research Council
  • National Institute on Aging
  • National Institute of Child Health and Human Development
Citations
616
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References
DNA methylation age of human tissues and cell types
Genome biology · 2013 · 7,042 citations
Regularization and Variable Selection Via the Elastic Net
Journal of the Royal Statistical Society Series B (Statistical Methodology) · 2005 · 20,431 citations
The Hallmarks of Aging
Cell · 2013 · 14,515 citations
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