article Open AccessTop 1% cited
Fast, sensitive and accurate integration of single-cell data with Harmony
Nature Methods · 2019 · Vol. 16(12) · pp. 1289–1296
Ilya Korsunsky✉(Broad Institute)Nghia Millard(Broad Institute)Jean Fan(Harvard University)Kamil Slowikowski(Broad Institute)Fan Zhang(Broad Institute)Kevin Wei(Brigham and Women's Hospital)Yuriy Baglaenko(Broad Institute)Michael B. Brenner(Brigham and Women's Hospital)Po‐Ru Loh(Broad Institute)Soumya Raychaudhuri(Broad Institute)
Single-cell and spatial transcriptomicsCell Image Analysis TechniquesAdvanced Fluorescence Microscopy TechniquesData integrationComputer scienceComputational biologyBiologyData mining
MeSH terms
AlgorithmsAnimalsBase SequenceHumansJurkat CellsMiceHEK293 CellsSingle-Cell AnalysisDatasets as Topic
Funding
- Roche
- National Institutes of Health
Citations
9,882
FWCI
170.72
field-weighted impact
References
54
Percentile
100%
vs. same field & year
Citations per year
Cited by
A benchmark of batch-effect correction methods for single-cell RNA sequencing data
Genome biology · 2020 · 1,177 citations
SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes
Nature Medicine · 2020 · 2,712 citations
Single cell RNA sequencing of 13 human tissues identify cell types and receptors of human coronaviruses
Biochemical and Biophysical Research Communications · 2020 · 908 citations
Dictionary learning for integrative, multimodal and scalable single-cell analysis
Nature Biotechnology · 2023 · 4,189 citations
Single-cell chromatin state analysis with Signac
Nature Methods · 2021 · 1,734 citations
References
Concept Decompositions for Large Sparse Text Data Using Clustering
Machine Learning · 2001 · 1,290 citations
Hierarchical Mixtures of Experts and the EM Algorithm
Neural Computation · 1994 · 2,597 citations
Enrichr: interactive and collaborative HTML5 gene list enrichment analysis tool
BMC Bioinformatics · 2013 · 8,187 citations
Gene Ontology: tool for the unification of biology
Nature Genetics · 2000 · 43,975 citations
Capturing Heterogeneity in Gene Expression Studies by Surrogate Variable Analysis
PLoS Genetics · 2007 · 2,139 citations
limma powers differential expression analyses for RNA-sequencing and microarray studies
Nucleic Acids Research · 2015 · 41,828 citations
STAR: ultrafast universal RNA-seq aligner
Bioinformatics · 2012 · 54,639 citations
Enrichr: a comprehensive gene set enrichment analysis web server 2016 update
Nucleic Acids Research · 2016 · 11,349 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.