articleTop 1% cited
MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets
Nature Biotechnology · 2017 · Vol. 35(11) · pp. 1026–1028
Martin Steinegger✉(Max Planck Institute for Biophysical Chemistry)Johannes Söding(Max Planck Institute for Biophysical Chemistry)
Genomics and Phylogenetic StudiesRNA and protein synthesis mechanismsBacteriophages and microbial interactionsSequence (biology)Computational biologyComputer scienceSequence analysisBiologyGeneticsGene
MeSH terms
AlgorithmsDatabase Management SystemsSoftwareSequence AlignmentSequence Analysis, ProteinDatabases, Protein
Funding
- Bundesministerium für Bildung und Forschung
- Seoul National University
- Horizon 2020 Framework Programme
Citations
4,806
FWCI
33.69
field-weighted impact
References
24
Percentile
100%
vs. same field & year
Citations per year
Cited by
NetSurfP‐2.0: Improved prediction of protein structural features by integrated deep learning
Proteins Structure Function and Bioinformatics · 2019 · 602 citations
A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core
Journal of Molecular Biology · 2017 · 2,711 citations
HH-suite3 for fast remote homology detection and deep protein annotation
BMC Bioinformatics · 2019 · 1,244 citations
OrthoFinder: phylogenetic orthology inference for comparative genomics
Genome biology · 2019 · 7,564 citations
Sensitive protein alignments at tree-of-life scale using DIAMOND
Nature Methods · 2021 · 4,573 citations
ColabFold: making protein folding accessible to all
Nature Methods · 2022 · 9,275 citations
Highly accurate protein structure prediction with AlphaFold
Nature · 2021 · 42,952 citations
Fast and accurate protein structure search with Foldseek
Nature Biotechnology · 2023 · 2,136 citations
References
Fast and sensitive protein alignment using DIAMOND
Nature Methods · 2014 · 14,618 citations
SCOP: A structural classification of proteins database for the investigation of sequences and structures
Journal of Molecular Biology · 1995 · 6,318 citations
Search and clustering orders of magnitude faster than BLAST
Bioinformatics · 2010 · 21,473 citations
Accelerated Profile HMM Searches
PLoS Computational Biology · 2011 · 7,253 citations
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Nucleic Acids Research · 1997 · 74,154 citations
Adaptive seeds tame genomic sequence comparison
Genome Research · 2011 · 1,431 citations
The Pfam protein families database: towards a more sustainable future
Nucleic Acids Research · 2015 · 6,395 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.
