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MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets

Nature Biotechnology · 2017 · Vol. 35(11) · pp. 1026–1028
Martin SteineggerJohannes Söding
Genomics and Phylogenetic StudiesRNA and protein synthesis mechanismsBacteriophages and microbial interactionsSequence (biology)Computational biologyComputer scienceSequence analysisBiologyGeneticsGene

MeSH terms

AlgorithmsDatabase Management SystemsSoftwareSequence AlignmentSequence Analysis, ProteinDatabases, Protein

Funding

  • Bundesministerium für Bildung und Forschung
  • Seoul National University
  • Horizon 2020 Framework Programme
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References
Fast and sensitive protein alignment using DIAMOND
Nature Methods · 2014 · 14,618 citations
Search and clustering orders of magnitude faster than BLAST
Bioinformatics · 2010 · 21,473 citations
Accelerated Profile HMM Searches
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Adaptive seeds tame genomic sequence comparison
Genome Research · 2011 · 1,431 citations
The Pfam protein families database: towards a more sustainable future
Nucleic Acids Research · 2015 · 6,395 citations
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