article Open AccessTop 1% cited
Integrating single-cell transcriptomic data across different conditions, technologies, and species
Nature Biotechnology · 2018 · Vol. 36(5) · pp. 411–420
Andrew Butler✉(New York Genome Center)Paul Hoffman(New York Genome Center)Peter Smibert(New York Genome Center)Efthymia Papalexi(New York Genome Center)Rahul Satija(New York Genome Center)
Single-cell and spatial transcriptomicsCancer Genomics and DiagnosticsExtracellular vesicles in diseaseComputational biologyBiologyProfiling (computer programming)PhenotypeTranscriptomeComputer scienceGeneticsGene
MeSH terms
Data AnalysisAnimalsHumansLeukocytes, MononuclearSoftwareSequence Analysis, RNAGene Expression ProfilingComputers, MolecularMiceSingle-Cell AnalysisHigh-Throughput Nucleotide SequencingTranscriptome
Funding
- National Science Foundation
- National Institutes of Health
Citations
14,332
FWCI
496.32
field-weighted impact
References
72
Percentile
100%
vs. same field & year
Citations per year
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References
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
Nature Biotechnology · 2014 · 7,571 citations
RELATIONS BETWEEN TWO SETS OF VARIATES
Biometrika · 1936 · 5,381 citations
Full-length RNA-seq from single cells using Smart-seq2
Nature Protocols · 2014 · 4,437 citations
Spatial reconstruction of single-cell gene expression data
Nature Biotechnology · 2015 · 7,447 citations
Canonical Correlation Analysis: An Overview with Application to Learning Methods
Neural Computation · 2004 · 3,271 citations
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
Cell · 2015 · 7,706 citations
limma powers differential expression analyses for RNA-sequencing and microarray studies
Nucleic Acids Research · 2015 · 41,828 citations
MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data
Genome biology · 2015 · 3,474 citations
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