article Open AccessTop 1% cited
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
Nature Biotechnology · 2014 · Vol. 32(4) · pp. 381–386
Cole Trapnell✉(Broad Institute)Davide Cacchiarelli(Broad Institute)Jonna Grimsby(Broad Institute)Prapti Pokharel(Broad Institute)Shuqiang Li(Fluidigm (United States))Michael Morse(Broad Institute)Niall J. Lennon(Broad Institute)Kenneth J. Livak(Fluidigm (United States))Tarjei S. Mikkelsen(Broad Institute)John L. Rinn(Broad Institute)
Single-cell and spatial transcriptomicsRNA Research and SplicingGenomics and Chromatin DynamicsTranscriptomeGene expressionCellular differentiationBiologyComputational biologyRegulation of gene expressionCell biologyDynamics (music)GeneTransformation (genetics)
MeSH terms
AlgorithmsCell DifferentiationCells, CulturedGene Expression RegulationHumansTranscription FactorsReproducibility of ResultsGene Expression ProfilingGenomicsMuscle DevelopmentMyoblastsTranscriptome
Citations
7,571
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References
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Genome biology · 2013 · 13,586 citations
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