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UCSF ChimeraX: Meeting modern challenges in visualization and analysis

Protein Science · 2017 · Vol. 27(1) · pp. 14–25
Thomas D. GoddardConrad C. HuangElaine C. MengEric F. PettersenGregory S. CouchJohn H. MorrisThomas E. Ferrin

Abstract

UCSF ChimeraX is next-generation software for the visualization and analysis of molecular structures, density maps, 3D microscopy, and associated data. It addresses challenges in the size, scope, and disparate types of data attendant with cutting-edge experimental methods, while providing advanced options for high-quality rendering (interactive ambient occlusion, reliable molecular surface calculations, etc.) and professional approaches to software design and distribution. This article highlights some specific advances in the areas of visualization and usability, performance, and extensibility. ChimeraX is free for noncommercial use and is available from http://www.rbvi.ucsf.edu/chimerax/ for Windows, Mac, and Linux.

Scientific Computing and Data ManagementBioinformatics and Genomic NetworksCell Image Analysis TechniquesVisualizationData scienceComputer scienceComputational biologyComputer graphics (images)BiologyArtificial intelligence

MeSH terms

SoftwareMolecular StructureImaging, Three-Dimensional

Funding

  • National Institutes of Health
  • National Institute of General Medical Sciences
Citations
5,669
FWCI
629.73
field-weighted impact
References
57
Percentile
100%
vs. same field & year
Citations per year
References
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UCSF Chimera—A visualization system for exploratory research and analysis
Journal of Computational Chemistry · 2004 · 47,120 citations
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