article Open AccessTop 1% cited
Salmon provides fast and bias-aware quantification of transcript expression
Nature Methods · 2017 · Vol. 14(4) · pp. 417–419
Rob Patro✉(Stony Brook University)Geet Duggal(DNAnexus (United States))Michael I. Love(Dana-Farber Cancer Institute)Rafael A. Irizarry(Harvard University)Carl Kingsford✉(Carnegie Mellon University)
Genomics and Phylogenetic StudiesCancer-related molecular mechanisms researchMolecular Biology Techniques and ApplicationsInferenceTranscriptomeAbundance (ecology)Expression (computer science)Computer scienceComputational biologyBiologyFeature (linguistics)Gene expressionGene
MeSH terms
AlgorithmsBase CompositionBayes TheoremSequence Analysis, RNAGene Expression Profiling
Citations
13,103
FWCI
268.99
field-weighted impact
References
29
Percentile
100%
vs. same field & year
Citations per year
Cited by
Splatter: simulation of single-cell RNA sequencing data
Genome biology · 2017 · 1,043 citations
iDEP: an integrated web application for differential expression and pathway analysis of RNA-Seq data
BMC Bioinformatics · 2018 · 1,671 citations
RNA sequencing: the teenage years
Nature Reviews Genetics · 2019 · 1,988 citations
Rapid and precise alignment of raw reads against redundant databases with KMA
BMC Bioinformatics · 2018 · 894 citations
Transcriptome assembly from long-read RNA-seq alignments with StringTie2
Genome biology · 2019 · 2,037 citations
Opportunities and challenges in long-read sequencing data analysis
Genome biology · 2020 · 2,566 citations
References
Improving RNA-Seq expression estimates by correcting for fragment bias
Genome biology · 2011 · 1,812 citations
The Cancer Genome Atlas Pan-Cancer analysis project
Nature Genetics · 2013 · 9,254 citations
Fast gapped-read alignment with Bowtie 2
Nature Methods · 2012 · 59,710 citations
Near-optimal probabilistic RNA-seq quantification
Nature Biotechnology · 2016 · 10,728 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.