article Open AccessTop 1% cited
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Nature Biotechnology · 2011 · Vol. 29(7) · pp. 644–652
Manfred Grabherr✉(Massachusetts Institute of Technology)Brian J. Haas(Broad Institute)Moran Yassour(Massachusetts Institute of Technology)Joshua Z. Levin(Massachusetts Institute of Technology)Dawn Thompson(Broad Institute)Ido Amit(Broad Institute)Xian Adiconis(Broad Institute)Fan Lin(Massachusetts Institute of Technology)Raktima Raychowdhury(Broad Institute)Qiandong Zeng(Broad Institute)Zehua Chen(Broad Institute)Evan Mauceli(Broad Institute)Nir Hacohen(Broad Institute)Andreas Gnirke(Massachusetts Institute of Technology)Nick Rhind(University of Massachusetts Chan Medical School)Federica Di Palma(Massachusetts Institute of Technology)Bruce W. Birren(Massachusetts Institute of Technology)Chad Nusbaum(Massachusetts Institute of Technology)Kerstin Lindblad‐Toh(Broad Institute)Nir Friedman(Hebrew University of Jerusalem)Aviv Regev(Massachusetts Institute of Technology)
Genomics and Phylogenetic StudiesRNA and protein synthesis mechanismsRNA modifications and cancerGenomeReference genomeBiologyDe novo transcriptome assemblyComputational biologySequence assemblyTranscriptomeMassive parallel sequencingDeep sequencingGenetics
MeSH terms
AlgorithmsBase SequenceMolecular Sequence DataReference ValuesRNASequence Analysis, RNAGene Expression ProfilingTranscriptome
Citations
22,340
FWCI
179.79
field-weighted impact
References
35
Percentile
100%
vs. same field & year
Citations per year
Cited by
Sodium taurocholate cotransporting polypeptide is a functional receptor for human hepatitis B and D virus
eLife · 2012 · 2,071 citations
Unprecedented genomic diversity of RNA viruses in arthropods reveals the ancestry of negative-sense RNA viruses
eLife · 2015 · 836 citations
Araport11: a complete reannotation of the <i>Arabidopsis thaliana</i> reference genome
The Plant Journal · 2016 · 1,437 citations
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Nature Protocols · 2012 · 12,813 citations
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Nature Protocols · 2013 · 8,967 citations
A survey of best practices for RNA-seq data analysis
Genome biology · 2016 · 2,822 citations
An improved genome release (version Mt4.0) for the model legume Medicago truncatula
BMC Genomics · 2014 · 467 citations
Principles of Long Noncoding RNA Evolution Derived from Direct Comparison of Transcriptomes in 17 Species
Cell Reports · 2015 · 678 citations
References
Alternative splicing: increasing diversity in the proteomic world
Trends in Genetics · 2001 · 1,234 citations
TopHat: discovering splice junctions with RNA-Seq
Bioinformatics · 2009 · 12,093 citations
SOAP2: an improved ultrafast tool for short read alignment
Bioinformatics · 2009 · 3,892 citations
<tt>BLAT</tt>—The <tt>BLAST</tt>-Like Alignment Tool
Genome Research · 2002 · 8,404 citations
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Nature Biotechnology · 2010 · 16,341 citations
De novo characterization of a whitefly transcriptome and analysis of its gene expression during development
BMC Genomics · 2010 · 406 citations
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Genome Research · 2008 · 9,674 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.