articleTop 1% cited
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
Nature Protocols · 2013 · Vol. 8(8) · pp. 1494–1512
Brian J. Haas✉(Broad Institute)Alexie Papanicolaou(ACT Government)Moran Yassour(Broad Institute)Manfred Grabherr(Uppsala University)Philip D. Blood(Pittsburgh Supercomputing Center)Joshua C. Bowden(Commonwealth Scientific and Industrial Research Organisation)Matthew Brian Couger(Oklahoma State University)David Eccles(Griffith University)Bo Li(University of Wisconsin–Madison)Matthias Lieber(Technische Universität Dresden)Matthew D. MacManes(QB3)Michael Ott(Ecosystem Sciences)Joshua Orvis(Human Genome Sciences (United States))Nathalie Pochet(Broad Institute)Francesco Strozzi(Parco Tecnologico Padano)Nathan T. Weeks(Agricultural Research Service)Rick Westerman(Purdue University West Lafayette)Thomas William(GWT-TUD (Germany))Colin N. Dewey(University of Wisconsin–Madison)Robert Henschel(Indiana University Bloomington)Richard D. LeDuc(Indiana University Bloomington)Nir Friedman(Hebrew University of Jerusalem)Aviv Regev✉(Broad Institute)
Genomics and Phylogenetic StudiesMicrobial Community Ecology and PhysiologyMolecular Biology Techniques and ApplicationsComputational biologyBioconductorRNA-SeqSequence assemblyWorkflowTranscriptomeBiologyDe novo transcriptome assemblyGenomeReference genome
MeSH terms
Base SequenceRNASchizosaccharomycesSoftwareSequence Analysis, RNAGene Expression ProfilingSchizosaccharomyces pombe ProteinsTranscriptome
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Genome Research · 2008 · 2,821 citations
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