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SOAP2: an improved ultrafast tool for short read alignment

Bioinformatics · 2009 · Vol. 25(15) · pp. 1966–1967

Ruiqiang Li✉(BGI Group (China))Chang Yu(University of Hong Kong)Yingrui Li(University of Southern Denmark)Tak‐Wah Lam(University of Hong Kong)Siu‐Ming Yiu(University of Hong Kong)Karsten Kristiansen(University of Southern Denmark)Jun Wang(University of Southern Denmark)

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Abstract

http://soap.genomics.org.cn.

Genomics and Phylogenetic Studies RNA and protein synthesis mechanisms Algorithms and Data CompressionComputer scienceSearch engine indexingTransformation (genetics)Reference genomeGenomeInformation retrievalBiologyGenetics

MeSH terms

HumansSoftwareGenome, HumanSequence AlignmentSequence Analysis, DNAComputational Biology

Citations

3,892

FWCI

70.18

field-weighted impact

References

6

Percentile

100%

vs. same field & year

Citations per year

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References

Mapping short DNA sequencing reads and calling variants using mapping quality scores

Genome Research · 2008 · 2,707 citations

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

Genome biology · 2009 · 22,766 citations

SOAP: short oligonucleotide alignment program

Bioinformatics · 2008 · 3,664 citations

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SOAP2: an improved ultrafast tool for short read alignment · Scinovex