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MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads

BMC Bioinformatics · 2023 · Vol. 24(1) · pp. 288–288

Marcela Uliano‐Silva✉(Wellcome Sanger Institute)João Gabriel R. N. Ferreira(Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro)Ksenia Krasheninnikova(Wellcome Sanger Institute)Mark Blaxter(Wellcome Sanger Institute)Nova MieszkowskaNeil HallPeter W. H. HollandRichard Durbin(University of Cambridge)Thomas A. RichardsPaul KerseyPeter M. HollingsworthWillie WilsonAlex D. TwyfordEster GayaMara LawniczakOwen LewisGavin R. BroadFergal J. MartinMichelle HartIan Barnes✉(Wellcome Sanger Institute)Giulio Formenti(Rockefeller University)Linelle Abueg(Rockefeller University)James Torrance(Wellcome Sanger Institute)Eugene W. Myers(Okinawa Institute of Science and Technology Graduate University)Richard Durbin(University of Cambridge)Mark Blaxter(Wellcome Sanger Institute)Shane McCarthy(University of Cambridge)

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Abstract

MitoHiFi is able to assemble mitochondrial genomes from a wide phylogenetic range of taxa from Pacbio HiFi data. MitoHiFi is written in python and is freely available on GitHub ( https://github.com/marcelauliano/MitoHiFi ). MitoHiFi is available with its dependencies as a Docker container on GitHub (ghcr.io/marcelauliano/mitohifi:master).

Genomics and Phylogenetic Studies Genetic diversity and population structure Protist diversity and phylogenyGenomeBiologyMitochondrial DNASequence assemblyComputational biologyPerlGeneticsPhylogenetic treeGenome projectGene