article Open AccessTop 1% cited
StringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Nature Biotechnology · 2015 · Vol. 33(3) · pp. 290–295
Mihaela Pertea✉(Johns Hopkins University)Geo Pertea(Johns Hopkins University)Corina Antonescu(Johns Hopkins University)Tsung-Cheng Chang(The University of Texas Southwestern Medical Center)Joshua T. Mendell(The University of Texas Southwestern Medical Center)Steven L. Salzberg(Johns Hopkins University)
Genomics and Phylogenetic StudiesRNA modifications and cancerMolecular Biology Techniques and ApplicationsSequence assemblyDe novo transcriptome assemblyTranscriptomeComputational biologyRNA-SeqComputer scienceSet (abstract data type)BiologySequence (biology)Software
MeSH terms
AlgorithmsHumansRNA, MessengerSoftwareSequence Analysis, RNAHEK293 CellsTranscriptome
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References
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
BMC Bioinformatics · 2011 · 22,985 citations
Evolution and Functions of Long Noncoding RNAs
Cell · 2009 · 5,110 citations
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Nature Biotechnology · 2011 · 22,340 citations
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Genome biology · 2013 · 13,586 citations
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
Nature Biotechnology · 2010 · 16,341 citations
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
Genes & Development · 2011 · 3,656 citations
An integrated encyclopedia of DNA elements in the human genome
Nature · 2012 · 19,173 citations
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