articleTop 1% cited
Prokka: rapid prokaryotic genome annotation
Bioinformatics · 2014 · Vol. 30(14) · pp. 2068–2069
Torsten Seemann✉(Monash University)
Abstract
Prokka is implemented in Perl and is freely available under an open source GPLv2 license from http://vicbioinformatics.com/.
Genomics and Phylogenetic StudiesRNA and protein synthesis mechanismsBacteriophages and microbial interactionsPerlComputer scienceGenomeContigAnnotationMIT LicenseSoftwareSequence assemblyGenome projectBacterial genome size
MeSH terms
SoftwareGenome, BacterialSequence Analysis, DNAGenomicsMolecular Sequence Annotation
Funding
- State Government of Victoria
Citations
18,891
FWCI
197.59
field-weighted impact
References
16
Percentile
100%
vs. same field & year
Citations per year
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