article Open AccessTop 1% cited
BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons
BMC Genomics · 2011 · Vol. 12(1) · pp. 402–402
Nabil-Fareed Alikhan✉(University of Queensland)Nicola K. Petty(University of Queensland)Nouri L. Ben Zakour(University of Queensland)Scott A. Beatson(University of Queensland)
Abstract
There is a clear need for a user-friendly program that can produce genome comparisons for a large number of prokaryote genomes with an emphasis on rapidly utilising unfinished or unassembled genome data. Here we present BRIG, a cross-platform application that enables the interactive generation of comparative genomic images via a simple graphical-user interface. BRIG is freely available for all operating systems at http://sourceforge.net/projects/brig/.
Genomics and Phylogenetic StudiesRNA and protein synthesis mechanismsBacteriophages and microbial interactionsGenomeVisualizationBiologyComputational biologyHybrid genome assemblySet (abstract data type)Generator (circuit theory)Whole genome sequencingComputer scienceGenetics
MeSH terms
Computer GraphicsSoftwareUser-Computer InterfaceGenome, BacterialGenome, ArchaealGenomics
Funding
- Medical Research Council
- National Health and Medical Research Council
Citations
3,346
FWCI
17.17
field-weighted impact
References
47
Percentile
100%
vs. same field & year
Citations per year
Cited by
The natural history of cutaneous propionibacteria, and reclassification of selected species within the genus Propionibacterium to the proposed novel genera Acidipropionibacterium gen. nov., Cutibacterium gen. nov. and Pseudopropionibacterium gen. nov.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · 2016 · 447 citations
A fatal outbreak of ST11 carbapenem-resistant hypervirulent Klebsiella pneumoniae in a Chinese hospital: a molecular epidemiological study
The Lancet Infectious Diseases · 2017 · 1,019 citations
Identification of a novel transposon-associated phosphoethanolamine transferase gene, mcr-5, conferring colistin resistance in d-tartrate fermenting Salmonella enterica subsp. enterica serovar Paratyphi B
Journal of Antimicrobial Chemotherapy · 2017 · 519 citations
References
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements
Genome Research · 2004 · 5,136 citations
Basic local alignment search tool
Journal of Molecular Biology · 1990 · 93,570 citations
Database resources of the National Center for Biotechnology Information: update
Nucleic Acids Research · 2003 · 11,003 citations
Fast and accurate short read alignment with Burrows–Wheeler transform
Bioinformatics · 2009 · 61,752 citations
Versatile and open software for comparing large genomes
Genome biology · 2004 · 5,792 citations
The Pangenome Structure of<i>Escherichia coli</i>: Comparative Genomic Analysis of<i>E. coli</i>Commensal and Pathogenic Isolates
Journal of Bacteriology · 2008 · 859 citations
Circos: An information aesthetic for comparative genomics
Genome Research · 2009 · 11,761 citations
<i>Consed:</i> A Graphical Tool for Sequence Finishing
Genome Research · 1998 · 3,327 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.
