article Open AccessTop 10% cited
BS-Seeker2: a versatile aligning pipeline for bisulfite sequencing data
BMC Genomics · 2013 · Vol. 14(1) · pp. 774–774
Weilong Guo(Tsinghua University)Petko Fiziev(University of California, Los Angeles)Weihong Yan(University of California, Los Angeles)Shawn Cokus(University of California, Los Angeles)Xueguang SunMichael Q. Zhang(Center for Systems Biology)Pao‐Yang Chen✉(Institute of Plant and Microbial Biology, Academia Sinica)Matteo Pellegrini✉(University of California, Los Angeles)
Abstract
Our evaluations on the performance show that BS-Seeker2 works efficiently and accurately for both WGBS data and RRBS data. BS-Seeker2 is freely available at http://pellegrini.mcdb.ucla.edu/BS_Seeker2/ and the Galaxy server.
Epigenetics and DNA MethylationRNA modifications and cancerCancer-related gene regulationBisulfite sequencingComputational biologyBisulfiteDNA methylationBiologyPipeline (software)DNA sequencingComputer scienceMethylated DNA immunoprecipitationDNA
MeSH terms
HumansSoftwareSulfitesGenome, HumanSequence AlignmentSequence Analysis, DNACpG IslandsDNA MethylationHigh-Throughput Nucleotide Sequencing
Funding
- National Natural Science Foundation of China
- China Scholarship Council
Citations
453
FWCI
9.72
field-weighted impact
References
19
Percentile
99%
vs. same field & year
Citations per year
Cited by
Epigenetic silencing of ZNF132 mediated by methylation-sensitive Sp1 binding promotes cancer progression in esophageal squamous cell carcinoma
Cell Death and Disease · 2018 · 395 citations
References
BSMAP: whole genome bisulfite sequence MAPping program
BMC Bioinformatics · 2009 · 1,296 citations
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Genome biology · 2009 · 22,766 citations
Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications
Bioinformatics · 2011 · 5,791 citations
SOAP: short oligonucleotide alignment program
Bioinformatics · 2008 · 3,664 citations
Galaxy: A platform for interactive large-scale genome analysis
Genome Research · 2005 · 2,058 citations
Fast gapped-read alignment with Bowtie 2
Nature Methods · 2012 · 59,710 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.