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Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR

Journal of Applied Microbiology · 2004 · Vol. 97(6) · pp. 1166–1177
Teemu RinttiläAnna KassinenErja MalinenLotta KrogiusAiri Palva

Abstract

To design and optimize an extensive set of real-time PCR assays targeting a large group of predominant and pathogenic GI microbial species for further use in updating the current knowledge of the putative role of gut microbiota in health and disease.

Clostridium difficile and Clostridium perfringens researchGut microbiota and healthHelicobacter pylori-related gastroenterology studiesBiologyMicrobiologyCampylobacter jejuni16S ribosomal RNACampylobacterBacteriaMetagenomicsReal-time polymerase chain reactionPathogenic bacteriaPolymerase chain reaction

MeSH terms

AdultBacteriaBase SequenceClostridiumDiaminesDNA, BacterialDNA, RibosomalEscherichia coliFecesFluorescent DyesHumansOrganic ChemicalsQuinolinesSpecies SpecificityPolymerase Chain Reaction
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