article Open AccessTop 1% cited
GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database
Bioinformatics · 2019 · Vol. 36(6) · pp. 1925–1927
Pierre-Alain Chaumeil✉(The University of Queensland)Aaron J. Mussig(The University of Queensland)Philip Hugenholtz(The University of Queensland)Donovan H. Parks✉(The University of Queensland)
Abstract
Supplementary data are available at Bioinformatics online.
Genomics and Phylogenetic StudiesProbiotics and Fermented FoodsRNA and protein synthesis mechanismsPython (programming language)GenomeMetagenomicsDocumentationMIT LicenseTaxonomy (biology)Source codeComputer scienceComputational biologyBacterial genome size
Citations
5,194
FWCI
152.39
field-weighted impact
References
20
Percentile
100%
vs. same field & year
Citations per year
Cited by
Polypolish: Short-read polishing of long-read bacterial genome assemblies
PLoS Computational Biology · 2022 · 681 citations
Integrating taxonomic, functional, and strain-level profiling of diverse microbial communities with bioBakery 3
eLife · 2021 · 2,128 citations
References
pplacer: linear time maximum-likelihood and Bayesian phylogenetic placement of sequences onto a fixed reference tree
BMC Bioinformatics · 2010 · 1,104 citations
Accelerated Profile HMM Searches
PLoS Computational Biology · 2011 · 7,253 citations
Prodigal: prokaryotic gene recognition and translation initiation site identification
BMC Bioinformatics · 2010 · 12,599 citations
Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea
Nature Biotechnology · 2017 · 2,588 citations
A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life
Nature Biotechnology · 2018 · 3,751 citations
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries
Nature Communications · 2018 · 5,376 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.