article Open AccessTop 1% cited
fastp: an ultra-fast all-in-one FASTQ preprocessor
Bioinformatics · 2018 · Vol. 34(17) · pp. i884–i890
Shifu Chen✉(Shenzhen Institutes of Advanced Technology)Yanqing ZhouYaru ChenJia Gu(Shenzhen Institutes of Advanced Technology)
Abstract
The open-source code and corresponding instructions are available at https://github.com/OpenGene/fastp.
Advanced Data Storage TechnologiesParallel Computing and Optimization TechniquesMedical Imaging Techniques and ApplicationsComputer sciencePreprocessorTrimmingPython (programming language)Adapter (computing)JavaData miningData pre-processingProgramming languageSource code
MeSH terms
HumansProgramming LanguagesQuality Control
Funding
- National Science Foundation
- National Natural Science Foundation of China
Citations
27,897
FWCI
689.30
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14
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100%
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Trimmomatic: a flexible trimmer for Illumina sequence data
Bioinformatics · 2014 · 67,908 citations
Fast gapped-read alignment with Bowtie 2
Nature Methods · 2012 · 59,710 citations
UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy
Genome Research · 2017 · 2,284 citations
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