article Open AccessTop 1% cited
SCENIC: single-cell regulatory network inference and clustering
Nature Methods · 2017 · Vol. 14(11) · pp. 1083–1086
Sara Aibar✉(VIB-KU Leuven Center for Brain & Disease Research)Carmen Bravo González‐Blas(VIB-KU Leuven Center for Brain & Disease Research)Thomas Moerman(IMEC)Vân Anh Huynh‐Thu(University of Liège)Hana Imrichová(VIB-KU Leuven Center for Brain & Disease Research)Gert Hulselmans(VIB-KU Leuven Center for Brain & Disease Research)Florian Rambow(VIB-KU Leuven Center for Cancer Biology)Jean‐Christophe Marine(VIB-KU Leuven Center for Cancer Biology)Pierre Geurts(University of Liège)Jan Aerts(IMEC)Joost van den Oord(KU Leuven)Zeynep Kalender Atak(VIB-KU Leuven Center for Brain & Disease Research)Jasper Wouters(VIB-KU Leuven Center for Brain & Disease Research)Stein Aerts(VIB-KU Leuven Center for Brain & Disease Research)
Single-cell and spatial transcriptomicsGene Regulatory Network AnalysisCell Image Analysis TechniquesCluster analysisInferenceComputational biologyComputer scienceGene regulatory networkArtificial intelligenceBiologyGeneticsGeneGene expression
MeSH terms
AlgorithmsAnimalsBrainHumansCluster AnalysisGene Expression ProfilingMiceGene Regulatory NetworksSingle-Cell Analysis
Funding
- Fonds Wetenschappelijk Onderzoek
- Vlaamse regering
Citations
6,605
FWCI
72.54
field-weighted impact
References
40
Percentile
100%
vs. same field & year
Citations per year
Cited by
Single-cell RNA-seq reveals ectopic and aberrant lung-resident cell populations in idiopathic pulmonary fibrosis
Science Advances · 2020 · 1,350 citations
A scalable SCENIC workflow for single-cell gene regulatory network analysis
Nature Protocols · 2020 · 1,475 citations
Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19
Nature Medicine · 2020 · 2,706 citations
Dimensionality reduction for visualizing single-cell data using UMAP
Nature Biotechnology · 2018 · 5,622 citations
References
Greedy function approximation: A gradient boosting machine.
The Annals of Statistics · 2001 · 27,794 citations
The GeneMANIA prediction server: biological network integration for gene prioritization and predicting gene function
Nucleic Acids Research · 2010 · 5,042 citations
Gene Expression Omnibus: NCBI gene expression and hybridization array data repository
Nucleic Acids Research · 2002 · 13,655 citations
Inferring Regulatory Networks from Expression Data Using Tree-Based Methods
PLoS ONE · 2010 · 2,212 citations
Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets
Cell · 2015 · 7,706 citations
iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections
PLoS Computational Biology · 2014 · 978 citations
Wisdom of crowds for robust gene network inference
Nature Methods · 2012 · 1,752 citations
limma powers differential expression analyses for RNA-sequencing and microarray studies
Nucleic Acids Research · 2015 · 41,828 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.
