article Open AccessTop 1% cited
The ClusPro web server for protein–protein docking
Nature Protocols · 2017 · Vol. 12(2) · pp. 255–278
Dima Kozakov✉(Stony Brook University)David R. Hall(Acpharis)Bing Xia(Boston University)Kathryn A. Porter(Boston University)Dzmitry Padhorny(Stony Brook University)Christine Yueh(Boston University)Dmitri Beglov(Boston University)Sándor Vajda(Boston University)
Protein Structure and DynamicsEnzyme Structure and FunctionGlycosylation and Glycoproteins ResearchProtein Data BankDocking (animal)Web serverProtein Data Bank (RCSB PDB)Computer sciencePairwise comparisonMacromolecular dockingEnergy landscapeProtein structureComputational science
MeSH terms
AlgorithmsHeparinThermodynamicsComputational BiologyInternetProtein Structure, QuaternaryProtein Interaction MappingDatabases, ProteinProtein Multimerization
Citations
3,230
FWCI
77.91
field-weighted impact
References
133
Percentile
100%
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References
How good is automated protein docking?
Proteins Structure Function and Bioinformatics · 2013 · 786 citations
Calculation of the total electrostatic energy of a macromolecular system: Solvation energies, binding energies, and conformational analysis
Proteins Structure Function and Bioinformatics · 1988 · 851 citations
The HADDOCK web server for data-driven biomolecular docking
Nature Protocols · 2010 · 1,402 citations
Principles of docking: An overview of search algorithms and a guide to scoring functions
Proteins Structure Function and Bioinformatics · 2002 · 1,239 citations
ZDOCK: An initial‐stage protein‐docking algorithm
Proteins Structure Function and Bioinformatics · 2003 · 1,398 citations
CAPRI: A Critical Assessment of PRedicted Interactions
Proteins Structure Function and Bioinformatics · 2003 · 707 citations
HADDOCK: A Protein−Protein Docking Approach Based on Biochemical or Biophysical Information
Journal of the American Chemical Society · 2003 · 3,186 citations
<scp>CHARMM</scp>: A program for macromolecular energy, minimization, and dynamics calculations
Journal of Computational Chemistry · 1983 · 14,885 citations
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