article Open AccessTop 10% cited
Improving the Physical Realism and Structural Accuracy of Protein Models by a Two-Step Atomic-Level Energy Minimization
Biophysical Journal · 2011 · Vol. 101(10) · pp. 2525–2534
Dong Xu(University of Michigan)Yang Zhang✉(University of Michigan)
Protein Structure and DynamicsEnzyme Structure and FunctionRNA and protein synthesis mechanismsEnergy minimizationAb initioComputer scienceChain (unit)MinificationConformational isomerismAlgorithmAtomic modelProtein structure predictionAtom (system on chip)
MeSH terms
AlgorithmsModels, MolecularProteinsThermodynamicsProtein Structure, SecondaryMolecular Dynamics Simulation
Citations
1,082
FWCI
6.39
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References
28
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98%
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References
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Satisfying Hydrogen Bonding Potential in Proteins
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Equation of State Calculations by Fast Computing Machines
The Journal of Chemical Physics · 1953 · 36,613 citations
Comparative Protein Modelling by Satisfaction of Spatial Restraints
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Structure validation by Cα geometry: ϕ,ψ and Cβ deviation
Proteins Structure Function and Bioinformatics · 2003 · 4,581 citations
Improved prediction of protein side‐chain conformations with SCWRL4
Proteins Structure Function and Bioinformatics · 2009 · 1,364 citations
Distance‐scaled, finite ideal‐gas reference state improves structure‐derived potentials of mean force for structure selection and stability prediction
Protein Science · 2002 · 926 citations
Scoring function for automated assessment of protein structure template quality
Proteins Structure Function and Bioinformatics · 2004 · 2,431 citations
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Improving the Physical Realism and Structural Accuracy of Protein Models by a Two-Step Atomic-Level Energy Minimization
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