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Navigating the tip of the genomic iceberg: Next‐generation sequencing for plant systematics

American Journal of Botany · 2011 · Vol. 99(2) · pp. 349–364

Shannon C. K. Straub✉(Oregon State University)Matthew Parks(Oregon State University)Kevin Weitemier(Oregon State University)Mark Fishbein(Oklahoma State University)Richard Cronn(Pacific Northwest Research Station)Aaron Liston(Oregon State University)

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Abstract

Adoption of NGS will facilitate progress in plant systematics, as whole plastome and rDNA cistrons, partial mitochondrial genomes, and low-copy nuclear markers can now be efficiently obtained for molecular phylogenetics studies.

Genomics and Phylogenetic Studies Plant Pathogens and Fungal Diseases Genetic diversity and population structureBiologyChloroplast DNADNA sequencingSystematicsEvolutionary biologyGenomePhylogenetic treeIllumina dye sequencingNuclear geneRibosomal DNA

MeSH terms

Computer SimulationDNA, RibosomalPhylogenyPolymorphism, GeneticGenomic LibrarySequence AlignmentSequence Analysis, DNAPlastidsDNA, PlantGenome, PlantGenomicsAsclepiasGenome, MitochondrialGenetic Loci

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Chloroplast DNA sequence utility for the lowest phylogenetic and phylogeographic inferences in angiosperms: The tortoise and the hare IV