article Open AccessTop 1% cited
Picante: R tools for integrating phylogenies and ecology
Bioinformatics · 2010 · Vol. 26(11) · pp. 1463–1464
Steven W. Kembel✉(The University of Queensland)Peter D. Cowan(University of California, Berkeley)Matthew R. Helmus(University of British Columbia)William K. Cornwell(University of Oregon)Hélène Morlon(The University of Queensland)David D. Ackerly(Xishuangbanna Tropical Botanical Garden)Simon P. Blomberg(The University of Queensland)Campbell O. Webb(The University of Queensland)
Abstract
Picante is a package for the R statistical language and environment written in R and C, released under a GPL v2 open-source license, and freely available on the web (http://picante.r-forge.r-project.org) and from CRAN (http://cran.r-project.org).
Ecology and Vegetation Dynamics StudiesEvolution and Paleontology StudiesLand Use and Ecosystem ServicesR packagePhylogenetic treeTraitPhylogenetic diversitySet (abstract data type)LicenseOpen sourceDiversity (politics)Software packageComputer science
MeSH terms
EcologyPhenotypePhylogenySoftwareBiodiversity
Funding
- National Science Foundation
- Gordon and Betty Moore Foundation
- Chinese Academy of Sciences
- Natural Sciences and Engineering Research Council of Canada
Citations
6,237
FWCI
137.56
field-weighted impact
References
27
Percentile
100%
vs. same field & year
Citations per year
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References
TESTING FOR PHYLOGENETIC SIGNAL IN COMPARATIVE DATA: BEHAVIORAL TRAITS ARE MORE LABILE
Evolution · 2003 · 4,360 citations
Tropical forest community ecology
Annals of Botany · 2009 · 658 citations
The merging of community ecology and phylogenetic biology
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Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness
Ecology Letters · 2001 · 6,342 citations
What to protect?—Systematics and the agony of choice
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APE: Analyses of Phylogenetics and Evolution in R language
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