article Open AccessTop 1% cited
ANGSD: Analysis of Next Generation Sequencing Data
BMC Bioinformatics · 2014 · Vol. 15(1) · pp. 356–356
Thorfinn Sand Korneliussen✉(Natural History Museum of Denmark)Anders Albrechtsen(University of Copenhagen)Rasmus Nielsen(University of California, Berkeley)
Abstract
The open source c/c++ program ANGSD is available at http://www.popgen.dk/angsd . The program is tested and validated on GNU/Linux systems. The program facilitates multiple input formats including BAM and imputed beagle genotype probability files. The program allow the user to choose between combinations of existing methods and can perform analysis that is not implemented elsewhere.
Genetic factors in colorectal cancerGenomics and Rare DiseasesCancer Genomics and DiagnosticsComputational biologyDNA sequencingDNA microarrayComputer scienceData scienceBiologyGeneticsDNAGene
MeSH terms
Gene FrequencyGenetics, PopulationGenotypeSoftwareLikelihood FunctionsPolymorphism, Single NucleotideHigh-Throughput Nucleotide Sequencing
Funding
- Villum Fonden
- National Research Foundation
- Danmarks Grundforskningsfond
- National Institutes of Health
Citations
3,201
FWCI
50.68
field-weighted impact
References
36
Percentile
100%
vs. same field & year
Citations per year
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