article Open AccessTop 1% cited
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
Bioinformatics · 2013 · Vol. 30(5) · pp. 614–620
Jiajie Zhang✉(Karlsruhe Institute of Technology)Kassian Kobert(Karlsruhe Institute of Technology)Tomáš Flouri(Heidelberg Institute for Theoretical Studies)Alexandros Stamatakis(Heidelberg Institute for Theoretical Studies)
Abstract
PEAR is implemented in C and uses POSIX threads. It is freely available at http://www.exelixis-lab.org/web/software/pear.
Genomics and Phylogenetic StudiesEnvironmental DNA in Biodiversity StudiesMicrobial Community Ecology and PhysiologyComputer sciencePEARSoftwareMerge (version control)Fragment (logic)AlgorithmParallel computingOperating systemWorld Wide Web
MeSH terms
SoftwareStaphylococcus aureusSequence AlignmentSequence Analysis, DNAGenomicsHigh-Throughput Nucleotide Sequencing
Funding
- Deutsche Forschungsgemeinschaft
Citations
4,799
FWCI
41.71
field-weighted impact
References
19
Percentile
100%
vs. same field & year
Citations per year
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