article Open AccessTop 10% cited
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data
Bioinformatics · 2012 · Vol. 28(24) · pp. 3211–3217
Evguenia Kopylova✉(Centre National de la Recherche Scientifique)Laurent Noé(Centre de recherche Inria Lille - Nord Europe)Hélène Touzet(Centre de recherche Inria Lille - Nord Europe)
Abstract
We present SortMeRNA, a new software designed to rapidly filter rRNA fragments from metatranscriptomic data. It is capable of handling large sets of reads and sorting out all fragments matching to the rRNA database with high sensitivity and low running time.
Genomics and Phylogenetic StudiesRNA modifications and cancerRNA and protein synthesis mechanismsRibosomal RNAComputational biologyBiologyRNACoding (social sciences)Computer scienceGeneGenetics
MeSH terms
AlgorithmsPhylogenyRNA, MessengerRNA, RibosomalRNA, Ribosomal, 16SSoftwareSequence Analysis, RNAEcosystemGene Expression Profiling
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