article Open AccessTop 1% cited
QUAST: quality assessment tool for genome assemblies
Bioinformatics · 2013 · Vol. 29(8) · pp. 1072–1075
Alexey Gurevich✉(Saint Petersburg Academic University)Vladislav Saveliev(University of California, San Diego)Nikolay Vyahhi(Saint Petersburg Academic University)Glenn Tesler(University of California, San Diego)
Abstract
Supplementary data are available at Bioinformatics online.
Genomics and Phylogenetic StudiesChromosomal and Genetic VariationsProtist diversity and phylogenyBenchmark (surveying)Computer scienceGenomeSequence assemblySoftwareQuality (philosophy)Data miningBiologyGeneticsGene
MeSH terms
AlgorithmsAnimalsChromosome MappingEscherichia coliHumansQuality ControlSoftwareSequence AlignmentGenomeSequence Analysis, DNAContig MappingGenomicsGenomic Structural Variation
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References
Versatile and open software for comparing large genomes
Genome biology · 2004 · 5,792 citations
IDBA-UD: a <i>de novo</i> assembler for single-cell and metagenomic sequencing data with highly uneven depth
Bioinformatics · 2012 · 3,193 citations
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