article Open AccessTop 1% cited
PyNAST: a flexible tool for aligning sequences to a template alignment
Bioinformatics · 2009 · Vol. 26(2) · pp. 266–267
J. Gregory Caporaso✉(University of Pennsylvania)Kyle Bittinger(University of Pennsylvania)Frederic D. Bushman(University of Pennsylvania)Todd Z. DeSantis(Lawrence Berkeley National Laboratory)Gary L. Andersen(University of Pennsylvania)Rob Knight(University of Pennsylvania)
Abstract
PyNAST is available at http://pynast.sourceforge.net.
Gut microbiota and healthGenomics and Phylogenetic StudiesMicrobial Community Ecology and PhysiologySoftware portabilityComputer sciencePython (programming language)Interface (matter)Graphical user interfaceApplication programming interfaceFeature (linguistics)User interfaceData miningProgramming language
MeSH terms
AlgorithmsSoftwareUser-Computer InterfaceSequence AlignmentSequence Analysis, RNADatabases, Genetic
Funding
- Bill and Melinda Gates Foundation
- National Institutes of Health
- National Cancer Institute
Citations
3,457
FWCI
14.52
field-weighted impact
References
7
Percentile
99%
vs. same field & year
Citations per year
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References
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
BMC Bioinformatics · 2004 · 9,268 citations
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
Applied and Environmental Microbiology · 2006 · 11,173 citations
Basic local alignment search tool
Journal of Molecular Biology · 1990 · 93,570 citations
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
Nucleic Acids Research · 1994 · 64,626 citations
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