Scinovex
article Open AccessTop 1% cited

The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists

Genome biology · 2007 · Vol. 8(9) · pp. R183–R183
Da Wei HuangBrad T. ShermanQina TanJack CollinsW. Gregory AlvordJean RoayaeiRobert D. StephensMichael BaselerH. Clifford LaneRichard A. Lempicki

Abstract

The DAVID Gene Functional Classification Tool http://david.abcc.ncifcrf.gov uses a novel agglomeration algorithm to condense a list of genes or associated biological terms into organized classes of related genes or biology, called biological modules. This organization is accomplished by mining the complex biological co-occurrences found in multiple sources of functional annotation. It is a powerful method to group functionally related genes and terms into a manageable number of biological modules for efficient interpretation of gene lists in a network context.

Bioinformatics and Genomic NetworksGene expression and cancer classificationMachine Learning in BioinformaticsBiologyGeneComputational biologyAnnotationContext (archaeology)Biological networkHuman geneticsGene AnnotationGene regulatory networkGene nomenclature

MeSH terms

AlgorithmsData Interpretation, StatisticalGenetic TechniquesHumansModels, TheoreticalPattern Recognition, AutomatedSoftwareCluster AnalysisComputational BiologyOligonucleotide Array Sequence AnalysisGene Expression ProfilingGenomicsDatabases, Genetic

Funding

  • U.S. Department of Health and Human Services
  • National Institutes of Health
  • National Cancer Institute
  • National Institute of Allergy and Infectious Diseases
Citations
2,525
FWCI
15.15
field-weighted impact
References
38
Percentile
99%
vs. same field & year
Citations per year
References
Bias, prevalence and kappa
Journal of Clinical Epidemiology · 1993 · 2,059 citations
Identifying biological themes within lists of genes with EASE
Genome biology · 2003 · 1,955 citations
Citation Network

How this paper connects to the literature. Drag to explore, click any node to open that paper.

The DAVID Gene Functional Classification Tool: a novel biological module-centric algorithm to functionally analyze large gene lists · Scinovex