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Identifying ChIP-seq enrichment using MACS

Nature Protocols · 2012 · Vol. 7(9) · pp. 1728–1740
Jianxing FengTao LiuBo QinYong ZhangXiaole Shirley Liu
Genomics and Chromatin DynamicsGenomics and Phylogenetic StudiesRNA modifications and cancerComputer scienceH3K4me3Computational biologyFalse discovery rateHistoneGenomeBiologyGeneticsGenePromoter

MeSH terms

AlgorithmsHistonesModels, GeneticSoftwareChromatin ImmunoprecipitationHepatocyte Nuclear Factor 3-alphaHigh-Throughput Nucleotide Sequencing
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References
Integrative genomics viewer
Nature Biotechnology · 2011 · 16,203 citations
The Sequence Alignment/Map format and SAMtools
Bioinformatics · 2009 · 66,208 citations
The Human Genome Browser at UCSC
Genome Research · 2002 · 10,897 citations
ChIP–seq: advantages and challenges of a maturing technology
Nature Reviews Genetics · 2009 · 2,264 citations
Model-based Analysis of ChIP-Seq (MACS)
Genome biology · 2008 · 19,514 citations
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