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Constant pressure molecular dynamics simulation: The Langevin piston method

The Journal of Chemical Physics · 1995 · Vol. 103(11) · pp. 4613–4621
Scott E. FellerYuhong ZhangRichard W. PastorBernard R. Brooks

Abstract

A new method for performing molecular dynamics simulations under constant pressure is presented. In the method, which is based on the extended system formalism introduced by Andersen, the deterministic equations of motion for the piston degree of freedom are replaced by a Langevin equation; a suitable choice of collision frequency then eliminates the unphysical ‘‘ringing’’ of the volume associated with the piston mass. In this way it is similar to the ‘‘weak coupling algorithm’’ developed by Berendsen and co-workers to perform molecular dynamics simulation without piston mass effects. It is shown, however, that the weak coupling algorithm induces artifacts into the simulation which can be quite severe for inhomogeneous systems such as aqueous biopolymers or liquid/liquid interfaces.

Spectroscopy and Quantum Chemical StudiesProtein Structure and DynamicsNanopore and Nanochannel Transport StudiesMolecular dynamicsPiston (optics)Formalism (music)RingingCoupling constantStatistical physicsClassical mechanicsPhysicsCoupling (piping)Constant (computer programming)
Citations
4,479
FWCI
2.27
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17
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87%
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References
Constant pressure molecular dynamics algorithms
The Journal of Chemical Physics · 1994 · 5,747 citations
New spherical‐cutoff methods for long‐range forces in macromolecular simulation
Journal of Computational Chemistry · 1994 · 1,149 citations
Constant pressure molecular dynamics for molecular systems
Molecular Physics · 1983 · 3,289 citations
Molecular dynamics with coupling to an external bath
The Journal of Chemical Physics · 1984 · 30,535 citations
Correlations in the Motion of Atoms in Liquid Argon
Physical Review · 1964 · 2,609 citations
Polymorphic transitions in single crystals: A new molecular dynamics method
Journal of Applied Physics · 1981 · 19,685 citations
Molecular dynamics simulations at constant pressure and/or temperature
The Journal of Chemical Physics · 1980 · 5,653 citations
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