Scinovex
article Open AccessTop 1% cited

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

BMC Genomics · 2009 · Vol. 10(1) · pp. 219–219
Eli MeyerGalina V. AglyamovaShi WangJade CarterDavid AbregoJohn K. ColbourneBette L. WillisMikhail V. Matz

Abstract

The methods described here for deep sequencing of the transcriptome should be widely applicable to generate catalogs of genes and genetic markers in emerging model organisms. Our data provide the most comprehensive sequence resource currently available for reef-building corals, and include an extensive collection of potential genetic markers for association and population connectivity studies. The characterization of the larval transcriptome for this widely-studied coral will enable research into the biological processes underlying stress responses in corals and evolutionary adaptation to global climate change.

Coral and Marine Ecosystems StudiesMarine Sponges and Natural ProductsIchthyology and Marine BiologyBiologyDe novo transcriptome assemblyTranscriptomeGenomeGeneGeneticsComputational biologyGenomicsSequence assemblyDeep sequencing

MeSH terms

AnimalsGene LibraryCluster AnalysisSequence Analysis, DNAComputational BiologyContig MappingPolymorphism, Single NucleotideGene Expression ProfilingGenomicsAnthozoa

Funding

  • Eli Lilly and Company
  • Lilly Endowment
Citations
506
FWCI
63.76
field-weighted impact
References
49
Percentile
100%
vs. same field & year
Citations per year
References
Coral bleaching––how and why?
Marine Pollution Bulletin · 2003 · 598 citations
Gene Ontology: tool for the unification of biology
Nature Genetics · 2000 · 43,975 citations
The Bioperl Toolkit: Perl Modules for the Life Sciences
Genome Research · 2002 · 1,698 citations
Ecological goods and services of coral reef ecosystems
Ecological Economics · 1999 · 2,035 citations
CAP3: A DNA Sequence Assembly Program
Genome Research · 1999 · 5,300 citations
Citation Network

How this paper connects to the literature. Drag to explore, click any node to open that paper.