article Open AccessTop 10% cited
Proteinortho: Detection of (Co-)orthologs in large-scale analysis
BMC Bioinformatics · 2011 · Vol. 12(1) · pp. 124–124
Marcus Lechner✉(Philipps University of Marburg)Sven Findeiß(Leipzig University)Lydia Steiner(Leipzig University)Manja Marz(Philipps University of Marburg)Peter F. Stadler(Santa Fe Institute)Sonja J. Prohaska(Leipzig University)
Abstract
Proteinortho significantly reduces the required amount of memory for orthology analysis compared to existing tools, allowing such computations to be performed on off-the-shelf hardware.
Genomics and Phylogenetic StudiesMachine Learning in BioinformaticsRNA and protein synthesis mechanismsComputer scienceGenomeSet (abstract data type)SoftwareGenomicsProteomeComputational biologyBottleneckData miningTheoretical computer science
MeSH terms
Base SequencePhylogenySoftwareSequence AlignmentGenomicsDatabases, Genetic
Funding
- Deutsche Forschungsgemeinschaft
Citations
1,264
FWCI
10.51
field-weighted impact
References
37
Percentile
99%
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References
OrthoMCL: Identification of Ortholog Groups for Eukaryotic Genomes
Genome Research · 2003 · 6,112 citations
SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
Nucleic Acids Research · 2007 · 6,832 citations
Database resources of the National Center for Biotechnology Information: update
Nucleic Acids Research · 2003 · 11,003 citations
Preservation of Duplicate Genes by Complementary, Degenerative Mutations
Genetics · 1999 · 3,544 citations
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