article Open AccessTop 1% cited
CellProfiler 4: improvements in speed, utility and usability
BMC Bioinformatics · 2021 · Vol. 22(1) · pp. 433–433
David R. Stirling✉(Broad Institute)Madison J. Swain-Bowden(Allen Institute for Cell Science)Alice Lucas(Broad Institute)Anne E. Carpenter(Broad Institute)Beth A. Cimini(Broad Institute)Allen Goodman(Broad Institute)
Abstract
CellProfiler 4 provides significantly improved performance in complex workflows compared to previous versions. This release will ensure that researchers will have continued access to CellProfiler's powerful computational tools in the coming years.
Cell Image Analysis TechniquesAdvanced Fluorescence Microscopy TechniquesSingle-cell and spatial transcriptomicsComputer scienceUsabilityWorkflowSoftwareModular designInterface (matter)Pipeline (software)Data miningProcess (computing)Human–computer interaction
MeSH terms
Image Processing, Computer-AssistedMicroscopySoftwareWorkflow
Funding
- Silicon Valley Community Foundation
- Chan Zuckerberg Initiative
- National Institutes of Health
- National Institute of General Medical Sciences
Citations
2,049
FWCI
316.87
field-weighted impact
References
18
Percentile
100%
vs. same field & year
Citations per year
References
NIH Image to ImageJ: 25 years of image analysis
Nature Methods · 2012 · 63,624 citations
CellProfiler: image analysis software for identifying and quantifying cell phenotypes
Genome biology · 2006 · 5,409 citations
Adaptive document image binarization
Pattern Recognition · 2000 · 2,279 citations
CellProfiler 3.0: Next-generation image processing for biology
PLoS Biology · 2018 · 2,102 citations
QuPath: Open source software for digital pathology image analysis
Scientific Reports · 2017 · 8,208 citations
ilastik: interactive machine learning for (bio)image analysis
Nature Methods · 2019 · 3,493 citations
Cellpose: a generalist algorithm for cellular segmentation
Nature Methods · 2020 · 4,059 citations
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