article Open AccessTop 1% cited
ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees
BMC Bioinformatics · 2018 · Vol. 19(S6) · pp. 153–153
Chao Zhang✉(University of California, San Diego)Maryam Rabiee(University of California, San Diego)Erfan Sayyari(University of California, San Diego)Siavash Mirarab(University of California, San Diego)
Abstract
ASTRAL-III is a faster version of the ASTRAL method for phylogenetic reconstruction and can scale up to 10,000 species. With ASTRAL-III, low support branches can be removed, resulting in improved accuracy.
Genomics and Phylogenetic StudiesGenetic diversity and population structurePlant and Fungal Species DescriptionsTree (set theory)Set (abstract data type)GenomeCoalescent theoryComputer scienceMathematicsAlgorithmComputational biologyBiologyTheoretical computer science
MeSH terms
AlgorithmsAnimalsBirdsComputer SimulationModels, GeneticPhylogenySpecies SpecificityTime FactorsDatabases, Genetic
Funding
- National Science Foundation
- San Diego Supercomputer Center
Citations
2,645
FWCI
76.47
field-weighted impact
References
48
Percentile
100%
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References
Bayes Estimation of Species Divergence Times and Ancestral Population Sizes Using DNA Sequences From Multiple Loci
Genetics · 2003 · 1,183 citations
FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
PLoS ONE · 2010 · 15,568 citations
IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?
Evolution · 2008 · 1,102 citations
Bayesian Inference of Species Trees from Multilocus Data
Molecular Biology and Evolution · 2009 · 2,556 citations
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Bioinformatics · 2014 · 33,807 citations
Relationships between gene trees and species trees.
Molecular Biology and Evolution · 1988 · 1,703 citations
Gene Trees in Species Trees
Systematic Biology · 1997 · 2,969 citations
Gene tree discordance, phylogenetic inference and the multispecies coalescent
Trends in Ecology & Evolution · 2009 · 2,003 citations
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