article Open AccessTop 10% cited
TreeShrink: fast and accurate detection of outlier long branches in collections of phylogenetic trees
BMC Genomics · 2018 · Vol. 19(S5) · pp. 272–272
Uyen Mai(University of California, San Diego)Siavash Mirarab✉(University of California, San Diego)
Abstract
TreeShrink is an effective method for detecting sequences that lead to unrealistically long branch lengths in phylogenetic trees. The tool is publicly available at https://github.com/uym2/TreeShrink .
Genomics and Phylogenetic StudiesPlant and Fungal Species DescriptionsPlant Diversity and EvolutionPhylogenetic treeTree (set theory)OutlierPhylogeneticsBiologySet (abstract data type)Phylogenetic networkSequence (biology)Tree rearrangementAlgorithm
MeSH terms
AlgorithmsAnimalsGenesHumansMammalsModels, GeneticPhylogenyPlantsSoftwareSpecies SpecificityComputational BiologyDatasets as Topic
Funding
- National Science Foundation
- San Diego Supercomputer Center
- National Institutes of Health
Citations
400
FWCI
9.84
field-weighted impact
References
47
Percentile
99%
vs. same field & year
Citations per year
References
Selection of Conserved Blocks from Multiple Alignments for Their Use in Phylogenetic Analysis
Molecular Biology and Evolution · 2000 · 10,681 citations
Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
Applied and Environmental Microbiology · 2006 · 11,173 citations
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Bioinformatics · 2009 · 13,067 citations
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