article Open AccessTop 1% cited
SILVA, RDP, Greengenes, NCBI and OTT — how do these taxonomies compare?
BMC Genomics · 2017 · Vol. 18(S2) · pp. 114–114
Monika Balvočiūtė✉(University of Tübingen)Daniel H. Huson(University of Tübingen)
Abstract
While we find that SILVA, RDP and Greengenes map well into NCBI, and all four map well into the OTT, mapping the two larger taxonomies on to the smaller ones is problematic.
Genomics and Phylogenetic StudiesMicrobial Community Ecology and PhysiologyGut microbiota and healthTaxonomy (biology)BiologyBiological classificationComputational biologyInformation retrievalEvolutionary biologyData scienceComputer scienceZoology
MeSH terms
AlgorithmsArchaeaBacteriaPhylogenyRNA, Ribosomal, 16SDatabases, GeneticMetagenomicsGene OntologyMicrobiota
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