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A Liouville-operator derived measure-preserving integrator for molecular dynamics simulations in the isothermal–isobaric ensemble

Journal of Physics A Mathematical and General · 2006 · Vol. 39(19) · pp. 5629–5651
Mark E. TuckermanJosé AlejandreRoberto López-RendónAndrea L. JochimGlenn Martyna

Abstract

The constant-pressure, constant-temperature (NPT) molecular dynamics approach is re-examined from the viewpoint of deriving a new measure-preserving reversible geometric integrator for the equations of motion. The underlying concepts of non-Hamiltonian phase-space analysis, measure-preserving integrators and the symplectic property for Hamiltonian systems are briefly reviewed. In addition, current measure-preserving schemes for the constant-volume, constant-temperature ensemble are also reviewed. A new geometric integrator for the NPT method is presented, is shown to preserve the correct phase-space volume element and is demonstrated to perform well in realistic examples. Finally, a multiple time-step version of the integrator is presented for treating systems with motion on several time scales.

Numerical methods for differential equationsQuantum, superfluid, helium dynamicsSuperconducting Materials and ApplicationsIntegratorMeasure (data warehouse)Isobaric processOperator (biology)Isothermal processMolecular dynamicsStatistical physicsPhysicsDynamics (music)Computer science

Funding

  • National Science Foundation
  • Consejo Nacional de Ciencia y Tecnología
  • Division of Chemistry
Citations
649
FWCI
5.48
field-weighted impact
References
51
Percentile
96%
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Citations per year
References
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