article Open AccessTop 10% cited
Molecular ecological network analyses
BMC Bioinformatics · 2012 · Vol. 13(1) · pp. 113–113
Ye Deng✉(University of Oklahoma)Yi‐Huei Jiang(University of Oklahoma)Yunfeng Yang(State Key Joint Laboratory of Environment Simulation and Pollution Control)Zhili He(University of Oklahoma)Feng Luo(Clemson University)Jizhong Zhou(University of Oklahoma)
Abstract
The RMT-based molecular ecological network analysis provides powerful tools to elucidate network interactions in microbial communities and their responses to environmental changes, which are fundamentally important for research in microbial ecology and environmental microbiology.
Microbial Community Ecology and PhysiologyBioinformatics and Genomic NetworksMicrobial Metabolic Engineering and BioproductionDNA microarrayComputational biologyBiologyEvolutionary biologyEcologyComputer scienceData scienceGeneGeneticsGene expression
MeSH terms
EcologyRNA, Ribosomal, 16SSoftwareSoilSoil MicrobiologyTemperatureEcosystemComputational BiologyGenes, rRNAMetagenomics
Funding
- National Science Foundation
- U.S. Department of Energy
- U.S. Department of Agriculture
- Tsinghua University
- Office of Science
- Biological and Environmental Research
Citations
3,112
FWCI
10.61
field-weighted impact
References
106
Percentile
99%
vs. same field & year
Citations per year
Cited by
Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation
Environmental Microbiology · 2015 · 460 citations
Climate warming enhances microbial network complexity and stability
Nature Climate Change · 2021 · 2,006 citations
Sparse and Compositionally Robust Inference of Microbial Ecological Networks
PLoS Computational Biology · 2015 · 1,814 citations
Erosion reduces soil microbial diversity, network complexity and multifunctionality
The ISME Journal · 2021 · 733 citations
The interconnected rhizosphere: High network complexity dominates rhizosphere assemblages
Ecology Letters · 2016 · 1,159 citations
Correlation detection strategies in microbial data sets vary widely in sensitivity and precision
The ISME Journal · 2016 · 850 citations
Keystone taxa as drivers of microbiome structure and functioning
Nature Reviews Microbiology · 2018 · 2,808 citations
References
WGCNA: an R package for weighted correlation network analysis
BMC Bioinformatics · 2008 · 28,332 citations
The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing
PLoS Biology · 2008 · 2,333 citations
Community structure in social and biological networks
Proceedings of the National Academy of Sciences · 2002 · 15,464 citations
Geometric Interpretation of Gene Coexpression Network Analysis
PLoS Computational Biology · 2008 · 898 citations
Emergence of Scaling in Random Networks
Science · 1999 · 35,882 citations
Finding community structure in networks using the eigenvectors of matrices
Physical Review E · 2006 · 4,836 citations
Hierarchical organization in complex networks
Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics · 2003 · 2,152 citations
Optimization by Simulated Annealing
Science · 1983 · 44,165 citations
Citation Network
How this paper connects to the literature. Drag to explore, click any node to open that paper.